Dave's Molecular Models

(To search the models (or to download a specific pdb file to your computer) go to JavaScript Search).

File revised: Thu, Mar 27, 2014 .

Note to facilitate viewing the models all links will appear in a new window

Index to all Dave's pages

Tutorials: Beginning Organic Chemistry. | Organic Nomenclature | Problem Solving

The following molecular models are part of Dave's molecular models database.

Note: The model presentation uses the Jmol applet requiring Java to be installed on your computer.

Model files copyright 1994-2004, 2005

The models may be used for educational or personal purposes, but may not be copied for publishing use without permission of the author.

Name (click for model)Comments
C2H4O260.06Methyl methanoate,
Methyl formate
Fumigant. Information."
C3H5ClO2108.53Methyl chloroethanoateMethyl chloroacetate"
C3H6O274.09Ethyl methanoate, Ethyl formate"
C3H6O274.09Methyl ethanoate, Methyl acetate"
C4H7ClO2122.56Methyl (R)-2-chloropropanoate"
C4H7ClO2122.56Methyl (S)-2-chloropropanoate"
C4H8O288.12Ethyl acetate"
C4H8O288.12Methyl propanoate"
C5H10O2102.15Ethyl propanoate"
C5H10O2102.15Methyl butanoateapple aroma"
C5H10O2102.15Propyl ethanoatepear aroma"
C5H10O2102.15Isopropyl ethanoatesolvent for plastics and fats, and used in perfumery.
Safety data."
C6H8O6176.14Ascorbic AcidVitamin C
Information on Vitamin C
Information on Vitamin C sources
Mor information on Vitamin C sources
Microscope Image of Crystals of Vitamin C"
C6H10O2114.16(R)-4-HexanolidePheromone component of the dermestid beetle, Trogoderma glabrum."
C6H12O2116.18Ethyl butanoate"
C6H12O2116.18Methyl (S)-2-methylbutanoate"
C6H12O2116.18Methyl (R)-2-methylbutanoate"
C6H12O2116.18Pent-1-yl methanoate"
C6H12O2116.183-methylbut-1-yl methanoateFruity odour"
C7H12Cl2O2199.092-Chloroethyl (S)-3-Chloropentanoate"
C7H12O2128.19Isopent-1-en-1-yl ethanoate'juicy fruit' aroma"
C7H14O2130.21Ethyl pentanoate"
C7H14O2130.213-Methylbut-1-yl ethanoatebanana or pear aroma"
C7H14O2130.212-Methylprop-1-yl propanoaterum aroma"
C8H6I2O2387.96Methyl 2,6-diiodobenzoate"
C8H7NO4181.16Methyl 4-nitrobenzoate"
C8H8O2136.16Methyl benzoateused in perfumery"
C8H8O2136.16Phenyl ethanoate"
C8H8O3152.16Methyl salicylateIn oil of wintergreen."
C8H10NO2152.19Methyl anthranilategrape aroma"
C8H14O2142.22Cyclohexyl ethanoate (chair, axial)"
C8H14O4174.22Dimethoxane chair, all equatorial
gasoline additive"
C8H16O2144.24Ethyl hexanoateartificial fruit flavour"
C8H16O2144.24Methyl 5-methylhexanoate"
C9H6O2146.15CoumarinFound in tonka beans, lavender oil and sweet clover"
C9H6O3162.15UmbelliferoneIn some sun screen lotions/creams"
C9H8O4180.17Acetylsalicylic Acidaspirin, asa
analgesic, antipyretic, anti-inflammatory information
The Aspirin story"
C9H10O2150.19Benzylyl ethanoatepeach aroma"
C9H11NO2165.21BenzocaineA topical anesthetic"
C9H16O4188.25Diethyl pentanedioate"
C9H17N7O4287.33Saxitoxinfrom dinoflagellates, which include Alexandrium tamarense, Gymnodinium catenatum, and Pyrodinium bahamense cause of 'red tide'.
C9H18O2158.27Methyl 2-isopropyl-3-methylbutanoate"
C9H18O2158.273-Methylbut-1-yl butanoatepear-like odour."
C10H10I2O2416.02Isopropyl 2,3-diiodobenzoate"
C10H11NO4209.22Isopropyl 2-nitrobenzoate"
C10H12O2164.22Ethyl phenylethanoatehoney aroma"
C10H12O2164.22(2Z,4Z,6E)-Deca-2,4,6-trien-5-olideQueen recognition pheromone component of the red imported fire ant, Solenopsis invicta."
C10H19O6PS2330.38MalathionInsecticide. Toxic"
C10H20O2172.3(R)-But-2-yl (S)-3-methylpentanoate"
C10H20O2172.3Octyl ethanoateorange aroma"
C10H20O2172.33-Methyl-1-butyl 3-methylbutanoateApple-like odour - used as apple essence."
C10H20O3188.3SitophilateAggregation pheromone (male) of the granary weevil, Sitophilus granarius."
C11H15NO2193.27Isobutyl 4-aminobenzoateTopical anaesthetic and sunscreen"
C11H18O2182.29Nerol formateAlarm pheromone of the cheese mite Tyrophagus putrescentiae
Used in perfumery, which led Thomas and Bessiere (in Total Synthesis of Natural Products, Vol. 4, p459) to wonder 'what the effect of a perfumed hand over a dish of doubtful cheese would be!'"
C11H18O2182.29(E)-Non-6-en-1-yl acetateAttractant for the female melon fly (Dacus cucurbitae)"
Dominicalure 1: a male-produced aggregation pheromone of the lesser grain borer, Rhyzopertha dominica."
Dominicalure 2: a male-produced aggregation pheromone of the lesser grain borer, Rhyzopertha dominica."
C11H20O3200.31Prop-1-yl (E)-8-hydroxyoct-5-enoate"
C11H22O2186.33(S)-Hept-2-yl butanoate"
C12H20O2196.32(3Z,11S)-Dodec-3-en-11-olideComponent of the aggregation pheromone of the rusty grain beetle, Cryptolestes ferrugineus."
C12H20O2196.32(3Z,11R)-Dodec-3-en-11-olideComponent of the aggregation pheromone of the merchant grain beetle, Oryzaephilus mercator."
C12H22O2198.34QuadrilureAggregation pheromone of male square-necked grain beetles, Cathartus quadricollis."
C12H22O2198.34InvictolideQueen recognition pheromone component of the red imported fire ant, Solenopsis invicta."
C12H24O2200.36(S)-Hex-3-yl hexanoate"
C13H20N2O2236.35Procaine, NovocaineA local anesthetic"
C14H6N4O12422.24Di-2,4-dinitrophenyl oxalate"
C14H18N2O5294.34AspartameNutrasweet, a synthetic, non-nutrative sweetener"
Used in sun screen lotions."
Sex pheromone of the grape vine moth, Lobesia botrana."
C14H26O2226.4(E)-Dodec-7-en-1-yl acetateSex pheromone of the false codling moth, Cryptophlevia leucotretia."
C14H26O2226.4(Z)-Dodec-7-en-1-yl acetateSex pheromone of the European grape berry moth.
Only the pure Z-diastereoisomer is bioactive with this moth."
C14H26O2226.4(E)-Dodec-9-en-1-yl acetatePheromone of the red bollworm moth, the cereal tortrix moth and rhe European pine shoot moth."
C14H26O2226.4(Z)-Dodec-7-en-1-yl acetatePheromone of the cabbage looper, Trichoplusia ni."
C15H18O5278.33CoriamyrtinToxic sesquiterpene from the leaves and fruit of Coraria myrtifolia."
C15H21NO2247.37DemerolNarcotic analgesic, similar in action to morphine.
C15H22O5282.37ArtemisininActive antimalarial constituent of the traditional Chinese medicinal herb Artemisia anua. (2000 years old remedy.)"
C15H24O2236.39Methyl (R,2E)-tetradeca-2,4,5-trienoateSex attractant of the male dried-bean weevil.
Naturally optically active due to allene structure.
Pheromone of the male dried bark beetle, Acanthoscelides obtectus, 74% this enantiomer. Specific rotation: -176"
C15H24O2236.39Methyl (S,2E)-tetradeca-2,4,5-trienoateNaturally occuring optically active due to allene structure.
Pheromone of the male dried bark beetle, Acanthoscelides obtectus, 26% this enantiomer. Specific rotation: +176"
C15H24O2236.39Methyl tetradeca-2,4,5-trenoatePheromone of the male dried bark beetle, Acanthoscelides obtectus, a naturally occuring (74% this enantiomer) chiral allene. Specific rotation: -176"
C15H30O2242.45LardolureAggregation pheromone of the acarid mite, Lardoglyphus konoi."
C16H18N2O6334.36NifedipineAntianginal; antihypertensive.
WWW reference."
C16H21NO3275.38AnnotinineMajor alkaloid of club mosses."
C17H21NO4303.39Cocainea local anesthetic from leaves of Erythroxylon coca, a bush in the Andes"
C17H34O2270.51Isopropyl tetradecanoateIsopropyl myristate. Used in cosmetics and topical medicines.
C18H10O2258.28Phenyl benzoate"
C18H27NO6353.46HygrophyllineIsolated from Senecio hygrophylus"
Female sex pheromone of the processionary moth, Thaumetopoea pityocampa, a Mediterranean pine tree defoliator."
C19H16O4308.35WarfarinRodenticide and anticoagulant (as Na salt)"
C19H22O6346.41Gibberellic acidPlant hormone - most potent of the growth promoting metabolites of Gibberella fujikuroi. Used as a plant growth regulator, especially for seedlings, and as a food additive in the malting of barley."
Attractive to the American pine sawfly, Neodiprion pinetum"
C20H28N2O5376.5Enalapril(Vasotec). An antihypertensive.
WWW reference."
C20H32O2304.52Arachidonic acid(5Z,8Z,11Z,14Z)-Icosa-5,6,11,14-tetraenoic acid, an essential fatty acid, occurs in liver, brain, glandular organs."
C21H23NO5369.45HeroinAcetylated morphine, highly addictive, banned substance. Dogs are trained to detect the acetic acid odour from its synthesis."
C22H19Br2NO3505.22DeltamethrinA pyrethrin insecticide
C22H26N2O4S414.56DiltiazemCardizem, a calcium channel blocker and coronary vasodilator.
WWW description"
C22H29NO2339.52DarvonNarcotic analgesic, similar in action to morphine.
C22H44O2340.66Isobutyl stearateUsed in cosmetics, soaps, lubricants."
Web site
More information
Crystals photograph"
C23H34O4374.57DigitoxigeninAglycon of digitoxin, a cardiotonic"
C30H40O6496.7AbsinthinVery bitter orange needle crystals from wormwood, Artemisia absinthium"
C33H40N2O9608.75ReserpineTranquilizer and antihypertensive."
C37H67NO13734.05Erythromycin AProduced by a strain of Streptomyces erythreus. Used as an antibacterial."
C40H64O12737.04NonactinMacrotetrolide antibiotic.
Forms complexes with ions - see 18-Crown-6"
C41H64O14781.05LanoxinDrug used for heart disease; heartbeat regulator.
WWW reference."
C50H70O14895.2Brevetoxin Bmarine neurotoxin associated with 'red tide' catastrophes on coastal areas around the world
The Harmful Algae Page
Intro to Dinoflagellata"
C57H110O6891.67Prop-1,2,3-yl triactodecanoateA triglyceride, fat."
C156H278O192458.34Sucrose octaoleate
non-hydrolyzing fat, useful for dieting!
Number of entries in table : 112

Index to all Dave's Pages.

Site hosted by Okanagan College: Chemistry at Okanagan College

Page upkeep: Dave Woodcock PhD. Comments by email to: Dave
This page last modified on: Thu, Mar 27, 2014 .